face-rhythm
0.3
Installation
Quick Start
Demo Notebooks
Pipeline Outputs and Concepts
Data Standards
face_rhythm package
Citation
Support
face-rhythm
Index
Index
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A
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B
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C
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D
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E
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F
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G
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H
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I
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J
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K
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L
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M
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N
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O
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P
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R
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S
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T
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U
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V
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W
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X
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Y
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Z
_
_assert_mode (face_rhythm.helpers.Equivalence_checker attribute)
_kwargs_allclose (face_rhythm.helpers.Equivalence_checker attribute)
A
add_text_to_images() (in module face_rhythm.helpers)
align_and_make_ROIs() (face_rhythm.rois.ROI_Alinger method)
Aligner (class in face_rhythm.alignment_multisession)
all_to_all (face_rhythm.alignment_multisession.Aligner attribute)
apply_clahe() (face_rhythm.alignment.Image_preparation_pipeline method)
apply_pipeline() (face_rhythm.alignment.Image_preparation_pipeline method)
apply_warp_transform() (in module face_rhythm.helpers)
augment_images() (face_rhythm.rois.Image_Aligner class method)
auto_fix_gaussFilt_step (face_rhythm.alignment_multisession.ECC_cv2 attribute)
B
bandpass_freqs (face_rhythm.alignment_multisession.PhaseCorrelationRegistration attribute)
batch_run() (in module face_rhythm.util)
batch_size (face_rhythm.alignment_multisession.RoMa attribute)
boundaries (face_rhythm.helpers.BufferedVideoReader attribute)
bounded_logspace() (in module face_rhythm.helpers)
BufferedVideoReader (class in face_rhythm.helpers)
C
check_keys_subset() (in module face_rhythm.helpers)
check_utilization() (face_rhythm.helpers.CPU_Device_Checker method)
(face_rhythm.helpers.NVIDIA_Device_Checker method)
clahe() (in module face_rhythm.helpers)
(in module face_rhythm.rois)
cleanup() (face_rhythm.point_tracking.PointTracker method)
(face_rhythm.spectral_analysis.VQT_Analyzer method)
close() (face_rhythm.visualization.FrameVisualizer method)
close_all_h5() (in module face_rhythm.h5_handling)
Cmap_conjunctive (class in face_rhythm.helpers)
cmaps (face_rhythm.helpers.Cmap_conjunctive attribute)
colors (face_rhythm.helpers.Colorwheel attribute)
Colorwheel (class in face_rhythm.helpers)
compare_file_hashes() (in module face_rhythm.helpers)
complex_colormap() (in module face_rhythm.visualization)
compose_remappingIdx() (in module face_rhythm.helpers)
compose_transform_matrices() (in module face_rhythm.helpers)
config (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.decomposition.TCA attribute)
(face_rhythm.point_tracking.PointTracker attribute)
(face_rhythm.spectral_analysis.VQT_Analyzer attribute)
contiguous (face_rhythm.data_importing.Dataset_videos attribute)
cosine_kernel_2D() (in module face_rhythm.helpers)
cp_reconstruction_EVR() (in module face_rhythm.helpers)
cp_to_dense() (in module face_rhythm.helpers)
CPU_Device_Checker (class in face_rhythm.helpers)
cv2RemappingIdx_to_pytorchFlowField() (in module face_rhythm.helpers)
D
d_0 (face_rhythm.point_tracking.PointTracker attribute)
Dataset_videos (class in face_rhythm.data_importing)
deep_update_dict() (in module face_rhythm.helpers)
DEFAULT_FALLBACK_WEIGHT_URLS (face_rhythm.alignment_multisession.RoMa attribute)
DEFAULT_WEIGHT_URLS (face_rhythm.alignment_multisession.RoMa attribute)
delete_all_slots() (face_rhythm.helpers.BufferedVideoReader method)
demo_transform() (face_rhythm.spectral_analysis.VQT_Analyzer method)
design_butter_bandpass() (in module face_rhythm.alignment_multisession)
device (face_rhythm.alignment_multisession.Aligner attribute)
(face_rhythm.alignment_multisession.ImageAlignmentChecker attribute)
(face_rhythm.alignment_multisession.ImageRegistrationMethod attribute)
dir_save (face_rhythm.util.Saver_Viz_Base attribute)
display (face_rhythm.visualization.FrameVisualizer attribute)
display_toggle_image_stack() (in module face_rhythm.visualization)
download_file() (in module face_rhythm.helpers)
downsample() (face_rhythm.alignment.Image_preparation_pipeline method)
dt (face_rhythm.helpers.Toeplitz_convolution2d attribute)
dtype (face_rhythm.helpers.Toeplitz_convolution2d attribute)
E
ECC_cv2 (class in face_rhythm.alignment_multisession)
Equivalence_checker (class in face_rhythm.helpers)
error_checking (face_rhythm.visualization.FrameVisualizer attribute)
example_image (face_rhythm.data_importing.Dataset_videos attribute)
exampleImage (face_rhythm.rois.ROIs attribute)
extract_frames() (face_rhythm.alignment.SFTPVideoFrameExtractor method)
extract_zip() (in module face_rhythm.helpers)
F
face_rhythm.alignment
module
face_rhythm.alignment_multisession
module
face_rhythm.data_importing
module
face_rhythm.decomposition
module
face_rhythm.h5_handling
module
face_rhythm.helpers
module
face_rhythm.pipelines
module
face_rhythm.point_tracking
module
face_rhythm.project
module
face_rhythm.rois
module
face_rhythm.spectral_analysis
module
face_rhythm.util
module
face_rhythm.visualization
module
fallback_weight_urls (face_rhythm.alignment_multisession.RoMa attribute)
Figure_Saver (class in face_rhythm.util)
fill_in_dict() (in module face_rhythm.helpers)
filt_in (face_rhythm.alignment_multisession.ImageAlignmentChecker attribute)
filt_out (face_rhythm.alignment_multisession.ImageAlignmentChecker attribute)
filters (face_rhythm.helpers.VQT attribute)
find_geometric_transformation() (in module face_rhythm.helpers)
find_low_spectral_variance_idx() (face_rhythm.alignment.Image_preparation_pipeline method)
find_paths() (in module face_rhythm.helpers)
find_subDict_key() (in module face_rhythm.helpers)
fit() (face_rhythm.decomposition.TCA method)
fit_geometric() (face_rhythm.alignment_multisession.Aligner method)
(face_rhythm.rois.Image_Aligner method)
fit_nonrigid() (face_rhythm.rois.Image_Aligner method)
fit_rigid() (face_rhythm.alignment_multisession.ECC_cv2 method)
(face_rhythm.alignment_multisession.ImageRegistrationMethod method)
(face_rhythm.alignment_multisession.NullRegistration method)
(face_rhythm.alignment_multisession.PhaseCorrelationRegistration method)
flatten_dict() (in module face_rhythm.helpers)
fliplr() (face_rhythm.rois.ROIs method)
flowField_to_remappingIdx() (in module face_rhythm.helpers)
fn_conj_cmap (face_rhythm.helpers.Cmap_conjunctive attribute)
fn_interp (face_rhythm.helpers.Colorwheel attribute)
formats_save (face_rhythm.util.Saver_Viz_Base attribute)
fourcc (face_rhythm.visualization.FrameVisualizer attribute)
FR_Module (class in face_rhythm.util)
frame_height_width (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.helpers.BufferedVideoReader attribute)
(face_rhythm.visualization.FrameVisualizer attribute)
frame_rate (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.helpers.BufferedVideoReader attribute)
(face_rhythm.visualization.FrameVisualizer attribute)
FrameVisualizer (class in face_rhythm.visualization)
freqs (face_rhythm.helpers.VQT attribute)
(face_rhythm.spectral_analysis.VQT_Analyzer attribute)
G
gaussFiltSize (face_rhythm.alignment_multisession.ECC_cv2 attribute)
gaussian() (in module face_rhythm.helpers)
generate_multiphasic_sinewave() (in module face_rhythm.helpers)
get_avg_fps() (face_rhythm.helpers.TorchCodecVideoReader method)
get_default_parameters() (in module face_rhythm.util)
get_device_handles() (face_rhythm.helpers.NVIDIA_Device_Checker method)
get_dir_contents() (in module face_rhythm.helpers)
get_flowFields() (face_rhythm.rois.Image_Aligner method)
get_frames() (in module face_rhythm.alignment)
get_frames_from_continuous_index() (face_rhythm.helpers.BufferedVideoReader method)
get_frames_from_single_video_index() (face_rhythm.helpers.BufferedVideoReader method)
get_path_between_nodes() (in module face_rhythm.alignment_multisession)
grayscale_to_rgb() (in module face_rhythm.helpers)
H
h5Obj_to_dict() (in module face_rhythm.h5_handling)
handle (face_rhythm.helpers.NVIDIA_Device_Checker attribute)
handle_cv2Imshow (face_rhythm.visualization.FrameVisualizer attribute)
hash_file() (in module face_rhythm.helpers)
hw (face_rhythm.alignment_multisession.ImageAlignmentChecker attribute)
I
idx_start (face_rhythm.point_tracking.PointTracker attribute)
Image_Aligner (class in face_rhythm.rois)
Image_preparation_pipeline (class in face_rhythm.alignment)
Image_Saver (class in face_rhythm.util)
ImageAlignmentChecker (class in face_rhythm.alignment_multisession)
ImageRegistrationMethod (class in face_rhythm.alignment_multisession)
img_hw (face_rhythm.rois.ROIs attribute)
info_static (face_rhythm.helpers.CPU_Device_Checker attribute)
(face_rhythm.helpers.NVIDIA_Device_Checker attribute)
invert_remappingIdx() (in module face_rhythm.helpers)
invert_warp_matrix() (in module face_rhythm.helpers)
item (face_rhythm.helpers.Lazy_repeat_item attribute)
J
json_load() (in module face_rhythm.helpers)
json_save() (in module face_rhythm.helpers)
K
k (face_rhythm.helpers.Toeplitz_convolution2d attribute)
kwargs_method (face_rhythm.util.Saver_Viz_Base attribute)
kwargs_PIL_save (face_rhythm.util.Image_Saver attribute)
kwargs_savefig (face_rhythm.util.Figure_Saver attribute)
L
Lazy_repeat_item (class in face_rhythm.helpers)
load_config_file() (in module face_rhythm.util)
load_run_info_file() (in module face_rhythm.util)
load_yaml_safe() (in module face_rhythm.util)
lookup (face_rhythm.helpers.BufferedVideoReader attribute)
M
make_2D_frequency_filter() (in module face_rhythm.alignment_multisession)
make_batches() (in module face_rhythm.helpers)
make_distance_grid() (in module face_rhythm.alignment_multisession)
make_h5_tree() (in module face_rhythm.h5_handling)
make_points() (face_rhythm.rois.ROIs method)
make_tiled_video_array() (in module face_rhythm.helpers)
make_VQT_filters() (in module face_rhythm.helpers)
mask (face_rhythm.point_tracking.PointTracker attribute)
mask_image_border() (in module face_rhythm.helpers)
mask_images (face_rhythm.rois.ROIs attribute)
merge_dict_into_h5_file() (in module face_rhythm.h5_handling)
merge_helper() (in module face_rhythm.h5_handling)
metadata (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.helpers.BufferedVideoReader attribute)
mode (face_rhythm.helpers.Toeplitz_convolution2d attribute)
mode_transform (face_rhythm.alignment_multisession.ECC_cv2 attribute)
model (face_rhythm.alignment_multisession.RoMa attribute)
module
face_rhythm.alignment
face_rhythm.alignment_multisession
face_rhythm.data_importing
face_rhythm.decomposition
face_rhythm.h5_handling
face_rhythm.helpers
face_rhythm.pipelines
face_rhythm.point_tracking
face_rhythm.project
face_rhythm.rois
face_rhythm.spectral_analysis
face_rhythm.util
face_rhythm.visualization
module_name (face_rhythm.util.FR_Module attribute)
N
n_cmaps (face_rhythm.helpers.Cmap_conjunctive attribute)
n_iter (face_rhythm.alignment_multisession.ECC_cv2 attribute)
n_points (face_rhythm.alignment_multisession.RoMa attribute)
neighbors (face_rhythm.point_tracking.PointTracker attribute)
normalize_data() (face_rhythm.decomposition.TCA method)
NullRegistration (class in face_rhythm.alignment_multisession)
num_channels (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.helpers.BufferedVideoReader attribute)
num_frames_total (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.helpers.BufferedVideoReader attribute)
num_points (face_rhythm.point_tracking.PointTracker attribute)
(face_rhythm.rois.ROIs attribute)
num_videos (face_rhythm.helpers.BufferedVideoReader attribute)
NVIDIA_Device_Checker (class in face_rhythm.helpers)
O
order (face_rhythm.alignment_multisession.Aligner attribute)
(face_rhythm.alignment_multisession.ImageAlignmentChecker attribute)
(face_rhythm.alignment_multisession.PhaseCorrelationRegistration attribute)
order_cp_factors_by_EVR() (in module face_rhythm.helpers)
order_factors_by_EVR() (face_rhythm.decomposition.TCA method)
overwrite (face_rhythm.util.Saver_Viz_Base attribute)
P
params_optical_flow (face_rhythm.point_tracking.PointTracker attribute)
params_outlier_handling (face_rhythm.point_tracking.PointTracker attribute)
params_visualization (face_rhythm.point_tracking.PointTracker attribute)
path (face_rhythm.helpers.VideoReaderWrapper attribute)
path_config (face_rhythm.util.Saver_Viz_Base attribute)
path_save (face_rhythm.visualization.FrameVisualizer attribute)
paths_videos (face_rhythm.data_importing.Dataset_videos attribute)
phase_correlation() (in module face_rhythm.alignment_multisession)
PhaseCorrelationRegistration (class in face_rhythm.alignment_multisession)
pickle_load() (in module face_rhythm.helpers)
pickle_save() (in module face_rhythm.helpers)
pipeline_basic() (in module face_rhythm.pipelines)
play_video_cv2() (in module face_rhythm.helpers)
play_video_with_points() (in module face_rhythm.visualization)
plot_alignment_results_geometric() (face_rhythm.alignment_multisession.Aligner method)
plot_colorwheel() (face_rhythm.helpers.Colorwheel method)
plot_factors() (face_rhythm.decomposition.TCA method)
plot_rois() (face_rhythm.rois.ROIs method)
point_positions (face_rhythm.point_tracking.PointTracker attribute)
(face_rhythm.rois.ROIs attribute)
(face_rhythm.spectral_analysis.VQT_Analyzer attribute)
points_tracked (face_rhythm.point_tracking.PointTracker attribute)
PointTracker (class in face_rhythm.point_tracking)
prepare_cv2_imshow() (in module face_rhythm.helpers)
prepare_directory_for_loading() (in module face_rhythm.helpers)
prepare_directory_for_saving() (in module face_rhythm.helpers)
prepare_filepath_for_loading() (in module face_rhythm.helpers)
prepare_filepath_for_saving() (in module face_rhythm.helpers)
prepare_params() (in module face_rhythm.helpers)
prepare_path() (in module face_rhythm.helpers)
prepare_project() (in module face_rhythm.project)
pseudo_length (face_rhythm.helpers.Lazy_repeat_item attribute)
R
radius_in (face_rhythm.alignment_multisession.Aligner attribute)
radius_out (face_rhythm.alignment_multisession.Aligner attribute)
rearrange_data() (face_rhythm.decomposition.TCA method)
rearrange_factors() (face_rhythm.decomposition.TCA method)
remap_images() (in module face_rhythm.helpers)
remap_points() (in module face_rhythm.helpers)
remappingIdx_geo (face_rhythm.alignment_multisession.Aligner attribute)
remappingIdx_to_flowField() (in module face_rhythm.helpers)
ROI_Alinger (class in face_rhythm.rois)
roi_points (face_rhythm.rois.ROIs attribute)
ROIs (class in face_rhythm.rois)
rolling_mean() (in module face_rhythm.helpers)
RoMa (class in face_rhythm.alignment_multisession)
roma_model_type (face_rhythm.alignment_multisession.RoMa attribute)
run_data (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.decomposition.TCA attribute)
(face_rhythm.point_tracking.PointTracker attribute)
(face_rhythm.spectral_analysis.VQT_Analyzer attribute)
(face_rhythm.util.FR_Module attribute)
run_info (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.decomposition.TCA attribute)
(face_rhythm.point_tracking.PointTracker attribute)
(face_rhythm.util.FR_Module attribute)
S
save_config() (face_rhythm.util.FR_Module method)
save_figure() (face_rhythm.util.Figure_Saver method)
save_gif() (face_rhythm.util.Image_Saver method)
(in module face_rhythm.helpers)
save_image() (face_rhythm.util.Image_Saver method)
save_run_data() (face_rhythm.util.FR_Module method)
save_run_info() (face_rhythm.util.FR_Module method)
Saver_Viz_Base (class in face_rhythm.util)
score_alignment() (face_rhythm.alignment_multisession.ImageAlignmentChecker method)
set_device() (in module face_rhythm.helpers)
set_iterator_frame_idx() (face_rhythm.helpers.BufferedVideoReader method)
set_point_positions() (face_rhythm.rois.ROIs method)
SFTPVideoFrameExtractor (class in face_rhythm.alignment)
show_group_items() (in module face_rhythm.h5_handling)
show_item_tree() (in module face_rhythm.h5_handling)
simple_cmap() (in module face_rhythm.helpers)
simple_load() (in module face_rhythm.h5_handling)
simple_save() (in module face_rhythm.h5_handling)
slots (face_rhythm.helpers.BufferedVideoReader attribute)
so (face_rhythm.helpers.Toeplitz_convolution2d attribute)
spectrograms (face_rhythm.spectral_analysis.VQT_Analyzer attribute)
system_info() (in module face_rhythm.util)
T
TCA (class in face_rhythm.decomposition)
tensorly_cp_to_device() (in module face_rhythm.helpers)
termination_eps (face_rhythm.alignment_multisession.ECC_cv2 attribute)
Toeplitz_convolution2d (class in face_rhythm.helpers)
torch_hilbert() (in module face_rhythm.helpers)
TorchCodecVideoReader (class in face_rhythm.helpers)
track_points() (face_rhythm.point_tracking.PointTracker method)
transform() (face_rhythm.spectral_analysis.VQT_Analyzer method)
transform_all() (face_rhythm.spectral_analysis.VQT_Analyzer method)
transform_images() (face_rhythm.alignment_multisession.Aligner method)
(face_rhythm.rois.Image_Aligner method)
transform_images_geometric() (face_rhythm.rois.Image_Aligner method)
transform_images_nonrigid() (face_rhythm.rois.Image_Aligner method)
transform_points() (face_rhythm.rois.Image_Aligner method)
U
um_per_pixel (face_rhythm.alignment_multisession.Aligner attribute)
use_match_search (face_rhythm.alignment_multisession.Aligner attribute)
using_custom_filters (face_rhythm.helpers.VQT attribute)
V
verbose (face_rhythm.alignment_multisession.ImageRegistrationMethod attribute)
(face_rhythm.util.Saver_Viz_Base attribute)
video_writer (face_rhythm.visualization.FrameVisualizer attribute)
VideoReaderWrapper (class in face_rhythm.helpers)
videos (face_rhythm.data_importing.Dataset_videos attribute)
(face_rhythm.point_tracking.PointTracker attribute)
violation_fraction (face_rhythm.point_tracking.PointTracker attribute)
violations (face_rhythm.point_tracking.PointTracker attribute)
violations_sparseCOO (face_rhythm.point_tracking.PointTracker attribute)
visualize_image_with_points() (face_rhythm.visualization.FrameVisualizer method)
VQT (class in face_rhythm.helpers)
VQT_Analyzer (class in face_rhythm.spectral_analysis)
vqt_model (face_rhythm.spectral_analysis.VQT_Analyzer attribute)
W
wait_for_loading() (face_rhythm.helpers.BufferedVideoReader method)
warp_matrices (face_rhythm.alignment_multisession.Aligner attribute)
warp_matrix_to_remappingIdx() (in module face_rhythm.helpers)
weight_urls (face_rhythm.alignment_multisession.RoMa attribute)
wins (face_rhythm.helpers.VQT attribute)
write_dict_to_h5() (in module face_rhythm.h5_handling)
X
x_axis (face_rhythm.spectral_analysis.VQT_Analyzer attribute)
x_shape (face_rhythm.helpers.Toeplitz_convolution2d attribute)
Y
yaml_load() (in module face_rhythm.helpers)
yaml_save() (in module face_rhythm.helpers)
Z
z_threshold (face_rhythm.alignment_multisession.Aligner attribute)